- s -

• SamHeader() : BamTools::SamHeader
• SamProgram() : BamTools::SamProgram
• SamProgramChain() : BamTools::SamProgramChain
• SamReadGroup() : BamTools::SamReadGroup
• SamReadGroupDictionary() : BamTools::SamReadGroupDictionary
• SamSequence() : BamTools::SamSequence
• SamSequenceDictionary() : BamTools::SamSequenceDictionary
• SaveAlignment() : BamTools::BamWriter
• Seek() : BamTools::IBamIODevice
• SetCompressionMode() : BamTools::BamWriter
• SetErrorString() : BamTools::IBamIODevice
• SetHeaderText() : BamTools::SamHeader
• SetIndex() : BamTools::BamReader
• SetIsDuplicate() : BamTools::BamAlignment
• SetIsFailedQC() : BamTools::BamAlignment
• SetIsFirstMate() : BamTools::BamAlignment
• SetIsMapped() : BamTools::BamAlignment
• SetIsMateMapped() : BamTools::BamAlignment
• SetIsMateReverseStrand() : BamTools::BamAlignment
• SetIsPaired() : BamTools::BamAlignment
• SetIsPrimaryAlignment() : BamTools::BamAlignment
• SetIsProperPair() : BamTools::BamAlignment
• SetIsReverseStrand() : BamTools::BamAlignment
• SetIsSecondMate() : BamTools::BamAlignment
• SetRegion() : BamTools::BamMultiReader , BamTools::BamReader , BamTools::BamMultiReader
• Size() : BamTools::SamProgramChain , BamTools::SamReadGroupDictionary , BamTools::SamSequenceDictionary
• SortAlignments() : BamTools::Algorithms::Sort