BamTools::SamProgram Struct Reference

Represents a SAM program record. More...

#include <SamProgram.h>

List of all members.

Public Member Functions
	SamProgram (void)
	default constructor
	SamProgram (const std::string &id)
	constructs program record with id
	SamProgram (const SamProgram &other)
	copy constructor
	~SamProgram (void)
	destructor
void	Clear (void)
	Clears all data fields.
bool	HasCommandLine (void) const
	Returns true if program record contains @PG: CL:<CommandLine>
bool	HasID (void) const
	Returns true if program record contains @PG: ID:<ID>
bool	HasName (void) const
	Returns true if program record contains @PG: PN:<Name>
bool	HasPreviousProgramID (void) const
	Returns true if program record contains @PG: PP:<PreviousProgramID>
bool	HasVersion (void) const
	Returns true if program record contains @PG: VN:<Version>
Public Attributes
std::string	CommandLine
	corresponds to @PG CL:<CommandLine>
std::string	ID
	corresponds to @PG ID:<ID>
std::string	Name
	corresponds to @PG PN:<Name>
std::string	PreviousProgramID
	corresponds to @PG PP:<PreviousProgramID>
std::string	Version
	corresponds to @PG VN:<Version>
Friends
class	BamTools::SamProgramChain

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Detailed Description

Represents a SAM program record.

Provides direct read/write access to the SAM header program records.

See also:

http://samtools.sourceforge.net/SAM1.pdf

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Constructor & Destructor Documentation

SamProgram::SamProgram

(

void

)

default constructor

SamProgram::SamProgram

(

const std::string &

id

)

constructs program record with id

Parameters:

id

desired program record ID

SamProgram::SamProgram

(

const SamProgram &

other

)

copy constructor

SamProgram::~SamProgram

(

void

)

destructor

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Member Function Documentation

void SamProgram::Clear

(

void

)

Clears all data fields.

bool SamProgram::HasCommandLine

(

void

)

const

Returns true if program record contains @PG: CL:<CommandLine>

bool SamProgram::HasID

(

void

)

const

Returns true if program record contains @PG: ID:<ID>

bool SamProgram::HasName

(

void

)

const

Returns true if program record contains @PG: PN:<Name>

bool SamProgram::HasPreviousProgramID

(

void

)

const

Returns true if program record contains @PG: PP:<PreviousProgramID>

bool SamProgram::HasVersion

(

void

)

const

Returns true if program record contains @PG: VN:<Version>

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Friends And Related Function Documentation

friend class BamTools::SamProgramChain [friend]

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Member Data Documentation

SamProgram::CommandLine

corresponds to @PG CL:<CommandLine>

SamProgram::ID

corresponds to @PG ID:<ID>

Required for valid SAM header.

SamProgram::Name

corresponds to @PG PN:<Name>

SamProgram::PreviousProgramID

corresponds to @PG PP:<PreviousProgramID>

SamProgram::Version

corresponds to @PG VN:<Version>

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The documentation for this struct was generated from the following files:

• SamProgram.h
• SamProgram.cpp