Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

BamTools::BamAlignment	The main BAM alignment data structure
BamTools::BamIndex	Provides methods for generating & loading BAM index files
BamTools::BamMultiReader	Convenience class for reading multiple BAM files
BamTools::BamReader	Provides read access to BAM files
BamTools::BamRegion	Represents a sequential genomic region
BamTools::BamWriter	Provides write access for generating BAM files
BamTools::Algorithms::Sort::ByName	Function object for comparing alignments by name
BamTools::Algorithms::Sort::ByPosition	Function object for comparing alignments by position
BamTools::Algorithms::Sort::ByTag< T >	Function object for comparing alignments by tag value
BamTools::CigarOp	Represents a CIGAR alignment operation
BamTools::IBamIODevice
BamTools::RefData	Represents a reference sequence entry
BamTools::SamHeader	Represents the SAM-formatted text header that is part of the BAM file header
BamTools::SamProgram	Represents a SAM program record
BamTools::SamProgramChain	Sorted container "chain" of SamProgram records
BamTools::SamReadGroup	Represents a SAM read group entry
BamTools::SamReadGroupDictionary	Container of SamReadGroup entries
BamTools::SamSequence	Represents a SAM sequence entry
BamTools::SamSequenceDictionary	Container of SamSequence entries
BamTools::Algorithms::Sort	Provides classes & methods related to sorting BamAlignments
BamTools::Algorithms::Sort::Unsorted	Placeholder function object