BamTools::BamReader Member List

This is the complete list of members for BamTools::BamReader, including all inherited members.

BamReader(void)	BamTools::BamReader
Close(void)	BamTools::BamReader
CreateIndex(const BamIndex::IndexType &type=BamIndex::STANDARD)	BamTools::BamReader
GetErrorString(void) const	BamTools::BamReader
GetFilename(void) const	BamTools::BamReader
GetHeader(void) const	BamTools::BamReader
GetHeaderText(void) const	BamTools::BamReader
GetNextAlignment(BamAlignment &alignment)	BamTools::BamReader
GetNextAlignmentCore(BamAlignment &alignment)	BamTools::BamReader
GetReferenceCount(void) const	BamTools::BamReader
GetReferenceData(void) const	BamTools::BamReader
GetReferenceID(const std::string &refName) const	BamTools::BamReader
HasIndex(void) const	BamTools::BamReader
IsOpen(void) const	BamTools::BamReader
Jump(int refID, int position=0)	BamTools::BamReader
LocateIndex(const BamIndex::IndexType &preferredType=BamIndex::STANDARD)	BamTools::BamReader
Open(const std::string &filename)	BamTools::BamReader
OpenIndex(const std::string &indexFilename)	BamTools::BamReader
Rewind(void)	BamTools::BamReader
SetIndex(BamIndex *index)	BamTools::BamReader
SetRegion(const BamRegion &region)	BamTools::BamReader
SetRegion(const int &leftRefID, const int &leftPosition, const int &rightRefID, const int &rightPosition)	BamTools::BamReader
~BamReader(void)	BamTools::BamReader